Along-strike variation in scarp morphology reflects differences in a fault's geomorphic and structural development and can thus indicate fault rupture history as well as mechanical segmentation. Parameters that define scarp morphology (height, width, slope) are typically measured or calculated manually. The time-consuming manual approach reduces the density and objectivity of measurements, and can lead to oversight of small-scale morphological variations that occur at a resolution impractical to capture. Furthermore, inconsistencies in the manual approach may also lead to unknown discrepancies and uncertainties between, and also within, individual fault scarp studies. Here, we aim to improve the efficiency, transparency and uniformity of calculating scarp morphological parameters by developing a semi-automated Scarp PARameTer Algorithm (SPARTA). We compare our findings against a traditional, manual analysis and assess the performance of the algorithm using a range of elevation model resolutions. We then apply our new algorithm to a 12 m resolution DEM for four southern Malawi fault scarps, located at the southern end of the East African Rift System: the Bilila-Mtakataka fault and three previously unreported scarps – Thyolo, Muona and Malombe. All but Muona exhibit first-order structural segmentation at their surface, and by using a 5 m resolution DEM derived from high-resolution stereo satellite imagery for the Bilila-Mtakataka fault scarp, we are able to quantify secondary structural segmentation. Our scarp height calculations from all four fault scarps suggests that if each scarp was formed by a single, complete rupture, the slip-length ratio for each fault exceeds the maximum typical value observed empirically in historical normal faulting earthquakes around the world, implying that their structural histories are more complex. The distribution of vertical displacement at the surface implies the structural segments of both the BMF and Thyolo fault have merged via rupture of discrete faults (hard-links) through several earthquake cycles, and the segments of the Malombe fault have connected via distributed deformation zones (soft-links). For all faults studied here, the length of earthquake ruptures may therefore exceed the constitutive length of each segment. Thus, our findings shed new light on the seismic hazard in southern Malawi, indicating evidence for a number of large (MW 7–8) prehistoric earthquakes, as well as providing a new semi-automated methodology (SPARTA) for calculating scarp morphological parameters, which can be used on other fault scarps to infer structural development.